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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19056119_19057673_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19056119 - 19057673

Intron Length:

1555

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAGGTGAG

5'SS Class:

major

3'SS Sequence:

TTCAGGGATGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTTTTCTTCAGG

Flanking Amino Acid:

PQGYSIVRRDTIIQKGFVGC

Intron Amino Acid Position:

1657

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

65.3

40.8

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

50.2

1.2

48.7

43.2

Minor 5ss

33.1

-1.9

3.5

43.6

44.4

Minor BPS

57.1

0.08

2.1

70.32

43.3

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218