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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19058305_19065917_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19058305 - 19065917

Intron Length:

7613

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACACCAA

5'SS Class:

major

3'SS Sequence:

TGTTAATAAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTTCTGTTAATA

Flanking Amino Acid:

GRPYFLFDPQGSAVAVTPAN

Intron Amino Acid Position:

1582

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

58.6

42.2

Major BPS

84.4

0.85

34.5

Major PPT

53.7

0.08

1.2

54.5

43.1

Minor 5ss

35.5

-1.7

3.3

47.1

48.3

Minor BPS

53.8

0.12

2.1

67.76

39.4

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218