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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19066049_19102484_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19066049 - 19102484

Intron Length:

36436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTAACCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

CTTTTTCTAACC

Flanking Amino Acid:

STLPANTYFTGIKVKFKTQE

Intron Amino Acid Position:

1538

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

27.6

Major BPS

81.9

0.79

0.8

81.9

Major PPT

80.1

0.68

0.9

75.3

38.7

Minor 5ss

31.4

-2.1

3.2

39.9

46.1

Minor BPS

63.2

0.39

1.7

74.1

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218