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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19102716_19113015_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19102716 - 19113015

Intron Length:

10300

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTAATGCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATG

Flanking Amino Acid:

DPGMGQTLAAAPRKLAAPHV

Intron Amino Acid Position:

1461

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

76.6

33.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.5

0.55

69.2

40.6

Minor 5ss

31.7

-2.1

3.1

36.4

Minor BPS

0.74

1.1

78.3

32.8

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218