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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19113161_19114539_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19113161 - 19114539

Intron Length:

1379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTATTT

5'SS Class:

major

3'SS Sequence:

GTTTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TATTAACAAACT

Flanking Amino Acid:

EQRFLPPFSQVLHIAEAYEL

Intron Amino Acid Position:

1413

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

74.4

36.8

Major BPS

79.2

0.73

75.3

39.4

Major PPT

83.4

0.75

0.9

77.1

37.1

Minor 5ss

42.6

-0.8

3.4

64.9

46.4

Minor BPS

45.3

-0.2

2.3

72.64

43.3

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218