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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19114698_19116229_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19114698 - 19116229

Intron Length:

1532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAATAGT

5'SS Class:

strong_major

3'SS Sequence:

AATTTGATTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATATAAAT

Flanking Amino Acid:

DWISGRTAEAAPVFMPAPSV

Intron Amino Acid Position:

1360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

76.9

38.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.5

0.57

71.1

43.3

Minor 5ss

36.9

-1.5

2.9

48.3

42.5

Minor BPS

58.6

0.35

1.9

83.5

36.8

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218