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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19116494_19118278_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19116494 - 19118278

Intron Length:

1785

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGACAT

5'SS Class:

major

3'SS Sequence:

CCTCTCCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATATAT

U12 Branch Point Sequence:

ATATATATATTT

Flanking Amino Acid:

VEWSPPAKPNGIIIRYELYM

Intron Amino Acid Position:

1272

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

64.3

41.6

Major BPS

71.4

0.53

67.3

39.3

Major PPT

74.5

0.55

0.7

30.2

Minor 5ss

32.4

-2

3.5

44.2

44.6

Minor BPS

45.6

-0.2

1.9

65.18

39.4

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218