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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19118774_19121871_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19118774 - 19121871

Intron Length:

3098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

TTCTTCTCACCT

Flanking Amino Acid:

IYVVEDYYPYSIQTFIDTTL

Intron Amino Acid Position:

1107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

86.4

28.9

Major BPS

0.87

0.8

85.6

Major PPT

78.2

0.64

0.9

76.9

37.3

Minor 5ss

43.5

-0.7

2.9

62.1

37.1

Minor BPS

59.1

0.37

1.9

79.4

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218