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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19122031_19126082_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19122031 - 19126082
Intron Length:
4052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATATGTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATTATTAAAT
Flanking Amino Acid:
DVHNLFGCSKTPLQQPPPTG
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.7
0.44
1
66.5
44.4
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
59.5
0.38
1.7
75.05
41.2

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218