About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19142457_19155094_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19142457 - 19155094
Intron Length:
12638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATTCTATAATA
Flanking Amino Acid:
TKNKSLLCDNIGGQCNCKRH
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.2
0.63
0.9
70.1
41.2
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
61.2
0.35
1.6
69.14
37.5

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218