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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19155226_19156052_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19155226 - 19156052
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CTTTCCTTCATG
Flanking Amino Acid:
VCDNCQHNTAGRNCELCKDF
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
67.7
0.44
1
58
38.9
Major PPT
81.5
0.71
0.8
77.3
30.3
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
65.8
0.35
1.8
70.75
43.1

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218