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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19165751_19167877_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19165751 - 19167877

Intron Length:

2127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGAGTG

5'SS Class:

strong_major

3'SS Sequence:

GTTATTTAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGTTATTTAAAC

Flanking Amino Acid:

PDSVNCLQLPRFTPYSRGNL

Intron Amino Acid Position:

444

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.6

38.5

Major BPS

100

1.24

0.5

100

Major PPT

70.6

0.46

1.1

66.5

43.1

Minor 5ss

40.1

-1.1

3.4

55.2

Minor BPS

64.4

0.43

1.6

73.66

36.5

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218