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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19168063_19169372_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19168063 - 19169372
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TATCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AGTTCATAAATT
Flanking Amino Acid:
TIDLQNGQYQVFYIVLQFFS
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.3
0.73
0.7
77.8
30.6
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
57
0.3
1.9
76.48
40

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218