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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19169668_19172305_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19169668 - 19172305

Intron Length:

2638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAC

5'SS Class:

strong_major

3'SS Sequence:

TATGCCGTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATGTATGTAATT

Flanking Amino Acid:

FRFYPVALSNRDILEVFSGK

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

77.5

30.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

63.3

0.3

1.1

57.4

Minor 5ss

33.1

-1.9

42.8

44.4

Minor BPS

0.01

2.1

70.69

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218