Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19172370_19173372_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19172370 - 19173372

Intron Length:

1003

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATCTC

5'SS Class:

strong_major

3'SS Sequence:

TATATTTTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

GATTATTTACTT

Flanking Amino Acid:

GTLQIGQSFTGLEQFVGRMQ

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

78.6

35.9

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

78.5

0.64

0.8

77.5

36.3

Minor 5ss

38.1

-1.3

3.1

52.9

44.3

Minor BPS

0.17

1.8

70.68

40.5

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218