About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19173509_19203008_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19173509 - 19203008
Intron Length:
29500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGATTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
ATTTTGTTGATT
Flanking Amino Acid:
VKKWIHLSVQVHHSRISFFL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
72.5
0.51
0.9
65.8
40.8
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
58.7
0.35
2
80.3
35.9

Associated Gene:

Gene:
USH2A
Ensembl Gene ID:
ENSAPLG00000008642
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009024
18817109 - 19208326
391218