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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19203175_19207841_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19203175 - 19207841

Intron Length:

4667

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

GTTATTTCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTTAT

U12 Branch Point Sequence:

TCTTCGTTATTT

Flanking Amino Acid:

VWLKPEQEGVMCVIEKAIDG

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.8

34.5

Major BPS

0.5

59.6

38.6

Major PPT

66.9

0.38

1.1

67.2

38.2

Minor 5ss

39.9

-1.1

2.9

56.1

41.4

Minor BPS

56.1

0.27

2.3

79.24

43.6

Associated Gene:

Gene:

USH2A

Ensembl Gene ID:

ENSAPLG00000008642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009024

18817109 - 19208326

391218