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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19239564_19250052_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19239564 - 19250052
Intron Length:
10489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCACA
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CCAAACTGAAAC
Flanking Amino Acid:
TLKAIALANSDSMHIEDVEA
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
63.7
42.4
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
34.6
-1.7
2.9
41.4
44.7
Minor BPS
44.2
-0.4
1.7
47.51
41

Associated Gene:

Gene:
ESRRG
Ensembl Gene ID:
ENSAPLG00000005309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028539
19239319 - 19515980
276662
ENSAPLT00000023915
19239319 - 19591186
351868
ENSAPLT00000005505
19239319 - 19591403
352085
ENSAPLT00000042163
19239319 - 19544082
304764
ENSAPLT00000039861
19239319 - 19515980
276662