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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19250323_19283740_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19250323 - 19283740
Intron Length:
33418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATATA
5'SS Class:
major
3'SS Sequence:
TTTTCCTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTTCCTATTC
Flanking Amino Acid:
VIIGWAKHIPGFSTLSLADQ
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
80.6
33.8
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
86.8
0.83
0.8
85.7
27.7
Minor 5ss
37.6
-1.4
3.1
51
45.5
Minor BPS
57
0.2
1.9
74.44
36.6

Associated Gene:

Gene:
ESRRG
Ensembl Gene ID:
ENSAPLG00000005309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028539
19239319 - 19515980
276662
ENSAPLT00000023915
19239319 - 19591186
351868
ENSAPLT00000005505
19239319 - 19591403
352085
ENSAPLT00000042163
19239319 - 19544082
304764
ENSAPLT00000039861
19239319 - 19515980
276662