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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19283903_19288458_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19283903 - 19288458
Intron Length:
4556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GCCATTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TGATCTTCTACT
Flanking Amino Acid:
PQLVQPAKKPYNKIVSHLLV
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
78
0.63
0.9
71.3
38.4
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
54.3
0.22
1.9
74.03
42.4

Associated Gene:

Gene:
ESRRG
Ensembl Gene ID:
ENSAPLG00000005309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028539
19239319 - 19515980
276662
ENSAPLT00000023915
19239319 - 19591186
351868
ENSAPLT00000005505
19239319 - 19591403
352085
ENSAPLT00000042163
19239319 - 19544082
304764
ENSAPLT00000039861
19239319 - 19515980
276662