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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19350786_19364952_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19350786 - 19364952
Intron Length:
14167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTCTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTCTATTACA
Flanking Amino Acid:
CKAFFKRTIQGNIEYSCPAT
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
79.1
36.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.3
0.82
0.7
80.6
29.9
Minor 5ss
32.4
-2
2.9
42.3
44.5
Minor BPS
55.8
0.18
1.9
72.06
39.9

Associated Gene:

Gene:
ESRRG
Ensembl Gene ID:
ENSAPLG00000005309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028539
19239319 - 19515980
276662
ENSAPLT00000023915
19239319 - 19591186
351868
ENSAPLT00000005505
19239319 - 19591403
352085
ENSAPLT00000042163
19239319 - 19544082
304764
ENSAPLT00000039861
19239319 - 19515980
276662