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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19365369_19469269_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19365369 - 19469269
Intron Length:
103901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTCTCCCCACTA
Flanking Amino Acid:
QCVVNVTRKGWLLCRMSSKD
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.8
0.51
0.8
65.3
28.9
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
44
-0.4
2.1
55.71
43.9

Associated Gene:

Gene:
ESRRG
Ensembl Gene ID:
ENSAPLG00000005309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039861
19239319 - 19515980
276662