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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19365369_19515894_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
5UTR

Intron Coordinates:
19365369 - 19515894

Intron Length:
150526

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGG|GTGAGTTTT

5'SS Class:
strong_major

3'SS Sequence:
CTCCCCACTACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTAAT

U12 Branch Point Sequence:
CTCTCCCCACTA

Flanking Amino Acid:
5UTR

Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
85.2
0.83
0.9
83.9
30.3

Major BPS
87.2
0.92
0.9
87.6
25.6

Major PPT
72.8
0.51
0.8
65.3
28.9

Minor 5ss
40.2
-1.1
3
49.9
46.4

Minor BPS
44
-0.4
2.1
55.71
43.9

Associated Gene:

Gene:
ESRRG

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19239319 - 19515980
276662