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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19469424_19544037_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19469424 - 19544037
Intron Length:
74614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTGACG
Flanking Amino Acid:
SFFSPPARHVDLLTFWLFHC
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62.4
44.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.3
0.8
0.7
80.9
31.3
Minor 5ss
44.3
-0.6
3.2
61.3
45.5
Minor BPS
64.2
0.3
1.8
73.13
39.1

Associated Gene:

Gene:
ESRRG
Ensembl Gene ID:
ENSAPLG00000005309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042163
19239319 - 19544082
304764