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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19469424_19591379_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19469424 - 19591379
Intron Length:
121956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTGACG
Flanking Amino Acid:
MQLLPVCLDLLTFWLFHC
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.3
0.8
0.7
80.9
31.3
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
64.2
0.3
1.8
73.13
39.1

Associated Gene:

Gene:
ESRRG
Ensembl Gene ID:
ENSAPLG00000005309
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005505
19239319 - 19591403
352085