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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19808119_19865659_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19808119 - 19865659
Intron Length:
57541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTTTGCCCATTT
Flanking Amino Acid:
KKASGNQNALITPGPGGSRK
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
90
0.9
0.6
89.4
19.2
Minor 5ss
41.6
-0.9
3.1
55.7
43.9
Minor BPS
44.5
-0.3
2.4
72.84
44.3

Associated Gene:

Gene:
GPATCH2
Ensembl Gene ID:
ENSAPLG00000005559
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005779
19773523 - 19885483
111961