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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19865740_19866823_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19865740 - 19866823
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTAATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTCTTTAATC
Flanking Amino Acid:
FPLMSHSGRRGFQSRFSHLH
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79
0.65
0.8
73.9
35.3
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
82.4
1
0.9
83.37
29.4

Associated Gene:

Gene:
GPATCH2
Ensembl Gene ID:
ENSAPLG00000005559
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005779
19773523 - 19885483
111961