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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19873362_19877640_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19873362 - 19877640
Intron Length:
4279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATTCTT
5'SS Class:
major
3'SS Sequence:
TCTCTTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTCTTATTA
Flanking Amino Acid:
QKGSDENMSDSESSSLSSSD
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
75.8
39.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.8
0.8
0.8
80.3
30.2
Minor 5ss
36.6
-1.5
3
51.3
44.9
Minor BPS
65.6
0.49
1.5
76.26
35.1

Associated Gene:

Gene:
GPATCH2
Ensembl Gene ID:
ENSAPLG00000005559
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005779
19773523 - 19885483
111961