About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19885957_19891014_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19885957 - 19891014
Intron Length:
5058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCGGA
5'SS Class:
major
3'SS Sequence:
TTTATGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTACTATAACT
Flanking Amino Acid:
ALREEYFRRNRCVDEDRKIK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
54.4
45
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.1
0.84
0.8
84.7
35.8
Minor 5ss
40.2
-1.1
3.5
56.3
47.8
Minor BPS
66.7
0.6
1.6
84.4
35.6

Associated Gene:

Gene:
SPATA17
Ensembl Gene ID:
ENSAPLG00000005733
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046278
19885504 - 19980015
94512
ENSAPLT00000041534
19885504 - 19980015
94512
ENSAPLT00000005928
19885889 - 19959740
73852