Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19893546_19899799_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19893546 - 19899799

Intron Length:

6254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAAAAC

5'SS Class:

major

3'SS Sequence:

CCTTGATTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATATAT

U12 Branch Point Sequence:

TTTTCCTTGATT

Flanking Amino Acid:

SRRYFRKIVKTAYFIMKMNF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

70.1

33.8

Major BPS

62.6

0.31

59.1

37.6

Major PPT

74.9

0.56

0.9

36.6

Minor 5ss

39.2

-1.2

2.9

51.4

45.5

Minor BPS

89.6

1.33

0.7

99.24

21.9

Associated Gene:

Gene:

SPATA17

Ensembl Gene ID:

ENSAPLG00000005733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041534

19885504 - 19980015

94512

ENSAPLT00000005928

19885889 - 19959740

73852