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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19904530_19923991_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19904530 - 19923991
Intron Length:
19462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGGTGTATAATT
Flanking Amino Acid:
EAVSVNNEIVRNELQEYAEM
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.1
32.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.9
0.83
0.8
82
33.9
Minor 5ss
35.2
-1.7
3.3
48.1
47.6
Minor BPS
48.9
-0
2
69.1
42.4

Associated Gene:

Gene:
SPATA17
Ensembl Gene ID:
ENSAPLG00000005733
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046278
19885504 - 19980015
94512
ENSAPLT00000041534
19885504 - 19980015
94512
ENSAPLT00000005928
19885889 - 19959740
73852