Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19924116_19941983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19924116 - 19941983

Intron Length:

17868

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTACA

5'SS Class:

major

3'SS Sequence:

ATCTTCTACTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTGAA

U12 Branch Point Sequence:

GTTAGTTGAAGT

Flanking Amino Acid:

KMHYLLSTEQIAGIYNSPFR

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.2

72.7

38.3

Major BPS

63.2

0.33

1.1

55.1

42.1

Major PPT

75.4

0.57

0.9

73.9

35.2

Minor 5ss

-2.2

2.7

35.2

40.7

Minor BPS

45.5

-0.2

2.1

66.11

44.4

Associated Gene:

Gene:

SPATA17

Ensembl Gene ID:

ENSAPLG00000005733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041534

19885504 - 19980015

94512

ENSAPLT00000005928

19885889 - 19959740

73852

ENSAPLT00000046278

19885504 - 19980015

94512