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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19942188_19947494_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19942188 - 19947494

Intron Length:

5307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAGTT

5'SS Class:

major

3'SS Sequence:

TACTTTTCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TTATCCTATACT

Flanking Amino Acid:

LPPIGRQKPQGPFRDTAEVL

Intron Amino Acid Position:

242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

1.1

78.9

35.3

Major BPS

70.8

0.52

70.6

31.6

Major PPT

78.4

0.64

0.9

78.3

34.5

Minor 5ss

41.9

-0.9

3.5

64.8

46.5

Minor BPS

64.3

0.53

85.07

41.2

Associated Gene:

Gene:

SPATA17

Ensembl Gene ID:

ENSAPLG00000005733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046278

19885504 - 19980015

94512

ENSAPLT00000041534

19885504 - 19980015

94512

ENSAPLT00000005928

19885889 - 19959740

73852