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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19947647_19956600_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19947647 - 19956600
Intron Length:
8954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTGAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTGAATT
Flanking Amino Acid:
EEWRNHIHDNEFLPFSSYHK
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.3
0.73
0.9
78.9
38.5
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
61.8
0.45
1.4
74.34
37.1

Associated Gene:

Gene:
SPATA17
Ensembl Gene ID:
ENSAPLG00000005733
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041534
19885504 - 19980015
94512
ENSAPLT00000005928
19885889 - 19959740
73852
ENSAPLT00000046278
19885504 - 19980015
94512