Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_19956737_19959282_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19956737 - 19959282

Intron Length:

2546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTACCGTCTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAA

U12 Branch Point Sequence:

TTGACCTTTACC

Flanking Amino Acid:

VQPNKWVTGKLLEWSGMWNT

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.6

1.05

0.7

81.4

32.7

Major BPS

57.2

0.18

1.1

58.3

34.3

Major PPT

75.9

0.58

0.9

68.9

Minor 5ss

34.5

-1.8

2.9

43.8

43.9

Minor BPS

67.2

0.52

1.7

75.73

40.7

Associated Gene:

Gene:

SPATA17

Ensembl Gene ID:

ENSAPLG00000005733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005928

19885889 - 19959740

73852