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Intron Name: Anas_platyrhynchos_platyrhynchos_3_19956737_19979913_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19956737 - 19979913

Intron Length:

23177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTCTCTTTTATT

Flanking Amino Acid:

VQPNKWVTGKDFQTVSPSIV

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.6

1.05

0.7

81.4

32.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

86.3

0.82

0.7

85.7

28.8

Minor 5ss

34.5

-1.8

2.9

43.8

43.9

Minor BPS

68.7

0.67

1.6

83.34

38.2

Associated Gene:

Gene:

SPATA17

Ensembl Gene ID:

ENSAPLG00000005733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041534

19885504 - 19980015

94512

ENSAPLT00000046278

19885504 - 19980015

94512