About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20057067_20058060_R

Intron Information:

Intron Rank:
145806
Intron Class:
major
Intron Phase:
Intron Coordinates:
20057067 - 20058060
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AGGAATTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
72.7
34.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
40.2
-1.1
2.7
48.2
47.9
Minor BPS
46.5
-0.1
1.8
60.74
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025830
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041241
20056733 - 20058293
1561