Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20059617_20060163_R

Intron Information:

Intron Rank:

145805

Intron Class:

major

Intron Phase:

Intron Coordinates:

20059617 - 20060163

Intron Length:

547

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGTGTG

5'SS Class:

major

3'SS Sequence:

AGTTATTTCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

AGTTATTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

68.8

42.2

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

75.6

0.58

0.9

68.9

41.1

Minor 5ss

-1.7

3.5

44.5

Minor BPS

52.8

0.08

1.9

67.43

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024460

20056733 - 20060387

3655