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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20198694_20199079_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20198694 - 20199079
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
TRCRCCSFYTSSELSSGLPD
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
0.8
70
36.5
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
RRP15
Ensembl Gene ID:
ENSAPLG00000005787
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018280
20198035 - 20217190
19156