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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20201225_20202092_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20201225 - 20202092
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTGTTCACCT
Flanking Amino Acid:
RERNLQRIATRGVVQLFNAV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76
0.58
0.8
74.3
29.1
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
47.8
-0
2.2
72.55
44.5

Associated Gene:

Gene:
RRP15
Ensembl Gene ID:
ENSAPLG00000005787
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005988
20196900 - 20208235
11336
ENSAPLT00000036870
20196900 - 20217190
20291
ENSAPLT00000018280
20198035 - 20217190
19156