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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20202292_20208152_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20202292 - 20208152
Intron Length:
5861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GCACAGGGGACT
Flanking Amino Acid:
NPGKGTKSKQTVLPSWFSVK
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.2
39.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.3
0.75
0.8
76.2
37.8
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
31.1
-1.4
2.4
43.78
39.9

Associated Gene:

Gene:
RRP15
Ensembl Gene ID:
ENSAPLG00000005787
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005988
20196900 - 20208235
11336