About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20230461_20276588_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20230461 - 20276588
Intron Length:
46128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGCGTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AATACATAAACA
Flanking Amino Acid:
KIDMQPFYPENAIPPSYYSL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
77
0.61
0.9
73.7
40.6
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
50.5
0.01
2
65.45
40.2

Associated Gene:

Gene:
TGFB2
Ensembl Gene ID:
ENSAPLG00000011679
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012174
20229907 - 20300915
71009