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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20298842_20300756_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20298842 - 20300756
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GCTGCCTTAATC
Flanking Amino Acid:
LWSSDTQHSRVLSLYNTINP
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
74.4
36
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
37.3
-1.4
2.6
40.4
39.1
Minor BPS
70
0.61
1.4
70.68
41.2

Associated Gene:

Gene:
TGFB2
Ensembl Gene ID:
ENSAPLG00000011679
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012174
20229907 - 20300915
71009