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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20316619_20317511_R

Intron Information:

Intron Rank:
129257
Intron Class:
major
Intron Phase:
Intron Coordinates:
20316619 - 20317511
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTAATTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79
0.65
0.9
72.8
36.1
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
51
0.11
1.5
66.19
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016746
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018691
20316349 - 20319117
2769