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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20326433_20328652_F

Intron Information:

Intron Rank:
143373
Intron Class:
major
Intron Phase:
Intron Coordinates:
20326433 - 20328652
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACTATT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCTTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
81.8
38.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
89.3
0.88
0.6
85
22.8
Minor 5ss
46.8
-0.3
2.7
60.7
43.8
Minor BPS
69.3
0.47
1.8
76.89
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027247
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032111
20325929 - 20328710
2782
ENSAPLT00000036716
20326096 - 20328710
2615