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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20436331_20436449_R

Intron Information:

Intron Rank:
142336
Intron Class:
major
Intron Phase:
Intron Coordinates:
20436331 - 20436449
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTTTTTTGAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
70.8
39.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
87.5
0.84
0.9
90.6
22.1
Minor 5ss
41.8
-0.9
2.8
50.9
45.2
Minor BPS
64.4
0.31
1.5
70.73
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023902
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027543
20435813 - 20437587
1775