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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20463279_20465827_R

Intron Information:

Intron Rank:
134897
Intron Class:
major
Intron Phase:
Intron Coordinates:
20463279 - 20465827
Intron Length:
2549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCATCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
79.8
0.67
0.8
77.8
30.9
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
53.4
0.09
1.8
68.66
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019920
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017560
20463130 - 20510826
47697