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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20465871_20508295_R

Intron Information:

Intron Rank:
134898
Intron Class:
major
Intron Phase:
Intron Coordinates:
20465871 - 20508295
Intron Length:
42425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTATGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.8
0.51
1
70.8
38.9
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
62.5
0.39
1.7
77.18
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019920
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017560
20463130 - 20510826
47697