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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20508417_20510239_R

Intron Information:

Intron Rank:
134899
Intron Class:
major
Intron Phase:
Intron Coordinates:
20508417 - 20510239
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GCGATCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.9
0.65
0.9
73.6
35.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
52.2
0.15
1.7
64.72
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019920
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017560
20463130 - 20510826
47697