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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_20508652_20513126_F

Intron Information:

Intron Rank:
127204
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
20508652 - 20513126
Intron Length:
4475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TGGACATTCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTGCTCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74.3
34.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
54
0.09
1.1
52.2
40.9
Minor 5ss
34.9
-1.7
2.9
42.4
38.2
Minor BPS
48.9
-0
2.1
75.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018589
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025276
20506510 - 20514493
7984